#workshop #docking #moldoc #externalevent
DEPARTMENT OF MICROBIOLOGY , RAM LAL ANAND COLLEGE
presents
DBT Sponsored National Workshop Under Star College Scheme On MOLECULAR DOCKING
31st March 2021 - 01st April 2021 | 11AM ONWARDS
Register: https://forms.gle/EBCsLmc3Fkv65Bst8
Zoom Meeting link: https://zoom.us/j/96749351142?pwd=andhR0k1aUFYUkREOGFEcTZWZVI0QT09
Resource person-
DR. IMTAIYAZ HASSAN
Assistant Professor (Structural Biology)
Centre of Interdisciplinary Research in Basic Sciences
Jamia Millia Islamia
&
DR. GIRINATH PILLAI
Director & Chief Scientific Officer, Zastra Innovations
Mentor of Change, Niti Ayog's Atal Tinkering Lab, Govt. of India
For queries, contact:
Dr. Sunila Hooda 9810473771
Anurag Singh 9471158656
@letslearnbioinformatics
DEPARTMENT OF MICROBIOLOGY , RAM LAL ANAND COLLEGE
presents
DBT Sponsored National Workshop Under Star College Scheme On MOLECULAR DOCKING
31st March 2021 - 01st April 2021 | 11AM ONWARDS
Register: https://forms.gle/EBCsLmc3Fkv65Bst8
Zoom Meeting link: https://zoom.us/j/96749351142?pwd=andhR0k1aUFYUkREOGFEcTZWZVI0QT09
Resource person-
DR. IMTAIYAZ HASSAN
Assistant Professor (Structural Biology)
Centre of Interdisciplinary Research in Basic Sciences
Jamia Millia Islamia
&
DR. GIRINATH PILLAI
Director & Chief Scientific Officer, Zastra Innovations
Mentor of Change, Niti Ayog's Atal Tinkering Lab, Govt. of India
For queries, contact:
Dr. Sunila Hooda 9810473771
Anurag Singh 9471158656
@letslearnbioinformatics
#handsontraining #docking #simulation
Free hands on training on Molecular Docking & Simulation
It is a Cordial invitation to you all to the Faculty Development Programme on Molecular Docking & Simulation organised by Padmashree Institute of Management and Sciences.
Date - 30/06/2021 to 04/07/2021
🔗 Register here for E -Certificate
🔗 Click here for zoom link
🔗 Click here for YouTube link
Zoom details
Meeting ID : 89654936654
Passcode: 735209
📢_____
@llbschool
@letslearnbioinformatics
Free hands on training on Molecular Docking & Simulation
It is a Cordial invitation to you all to the Faculty Development Programme on Molecular Docking & Simulation organised by Padmashree Institute of Management and Sciences.
Date - 30/06/2021 to 04/07/2021
🔗 Register here for E -Certificate
🔗 Click here for zoom link
🔗 Click here for YouTube link
Zoom details
Meeting ID : 89654936654
Passcode: 735209
📢_____
@llbschool
@letslearnbioinformatics
#DBT_INDIA #docking #paid #hands_on_training #Molecular_dynamics
Hands On training program on Molecular Docking and Molecular Dynamics
on 13th-15th September, 2021
🔗Registration link
🔎More details
📢________
@llbschool
@letslearnbioinformatics
Hands On training program on Molecular Docking and Molecular Dynamics
on 13th-15th September, 2021
🔗Registration link
🔎More details
📢________
@llbschool
@letslearnbioinformatics
#docking #crystallography #structural_biology
👩🏻💻 DOCKing
- Overview
- New versions on DOCK
- Required links for DOCKing
- Modeling programs
- DOCKing database
🧠 Learn about DOCK
Source : University of California, San Francisco
📢_______
@llbschool
@letslearnbioinformatics
👩🏻💻 DOCKing
- Overview
- New versions on DOCK
- Required links for DOCKing
- Modeling programs
- DOCKing database
🧠 Learn about DOCK
Source : University of California, San Francisco
📢_______
@llbschool
@letslearnbioinformatics
#MDsimulation #docking #bioinformatics #workshop #paid
INBIOSIS Workshop Series on 17-18 Nov 2021
▶️ Topic - Molecular Dynamic Simulation of Protein-ligand Complex
You will learn about
1️⃣ How to setup simulation for a protein-ligand complex. Participants will experience the setup of protein-ligand complex using Gromacs and conduct the simulation. Subsequently, data analysis of the simulation for protein-ligand interaction that include hydrogen bond analysis, and ligand binding affinity calculated using MMPBSA approach.
2️⃣ Participants will learn how MD can best be applied to research projects. Lastly, in-vitro verification study of biomolecular interactions and thermodynamics will be presented by speaker.
🌐 Visit here for Registration
Fees details attached in brouchre.
In case of queries , email at inbiosis.workshop@gmail.com
📢_________
@llbschool
@letslearnbioinformatics
INBIOSIS Workshop Series on 17-18 Nov 2021
▶️ Topic - Molecular Dynamic Simulation of Protein-ligand Complex
You will learn about
1️⃣ How to setup simulation for a protein-ligand complex. Participants will experience the setup of protein-ligand complex using Gromacs and conduct the simulation. Subsequently, data analysis of the simulation for protein-ligand interaction that include hydrogen bond analysis, and ligand binding affinity calculated using MMPBSA approach.
2️⃣ Participants will learn how MD can best be applied to research projects. Lastly, in-vitro verification study of biomolecular interactions and thermodynamics will be presented by speaker.
🌐 Visit here for Registration
Fees details attached in brouchre.
In case of queries , email at inbiosis.workshop@gmail.com
📢_________
@llbschool
@letslearnbioinformatics
#workshop #free #Docking #CADD #DrugDiscovery #Bioinformatics #MolecularDocking
Free workshop on all new features of AutoDock Vina 1.2
This year, popular docking program AutoDock Vina introduced a very new, upgraded and feature rich version of vina - vina 1.2
Learn all about the changes, new additions and setting up of vina 1.2
Prerequisite - It would be easier if you have already used older version of vina, but you can do without it too
🗓Nov 28 ⏰5PM (IST)
👨🏻💻 Register free now at - https://bit.ly/vina1_2
Note: This is a free session for learning purpose and certificate will NOT be provided.
📢___________________
Free workshop on all new features of AutoDock Vina 1.2
This year, popular docking program AutoDock Vina introduced a very new, upgraded and feature rich version of vina - vina 1.2
Learn all about the changes, new additions and setting up of vina 1.2
Prerequisite - It would be easier if you have already used older version of vina, but you can do without it too
🗓Nov 28 ⏰5PM (IST)
👨🏻💻 Register free now at - https://bit.ly/vina1_2
Note: This is a free session for learning purpose and certificate will NOT be provided.
📢___________________
channel @llbschooldiscuss @letslearnbioinformatics#workshop #handson #docking #md
Hands-on Training on "Molecular Docking and Molecular Dynamics" organized by Gujarat Biotechnology Research Centre, DST, GoG
🗓Date: 17th - 21st January 2022
👨🏻💻Register via this link
🎯Last date of Application: 09th Jan 2022
📢__________
Channel @llbschool
Forum @letslearnbioinformatics
🗼Nyberman_Bioinformatics_Europe
Hands-on Training on "Molecular Docking and Molecular Dynamics" organized by Gujarat Biotechnology Research Centre, DST, GoG
🗓Date: 17th - 21st January 2022
👨🏻💻Register via this link
🎯Last date of Application: 09th Jan 2022
📢__________
Channel @llbschool
Forum @letslearnbioinformatics
🗼Nyberman_Bioinformatics_Europe
#workshop #training #docking #virtualscreening #fb #li
FDP Workshop on Molecular Docking, Virtual Screening & Computational Biology by Under Skill Vigyan Initiative Scheme of DBTIndia, Govt. of India & Coordinated by TSCOST, NIPER Hyderabad
🗓 Scheduled from 28th March to 8th April, 2022
🧿 NO registration fee
🖇Check the brochure for more details and👨💻 apply
http://www.niperhyd.ac.in/PDFFiles/FDP_Brochure_2022.pdf
📢«««««««««
Channel @llbschool
Forum @letslearnbioinformatics
FDP Workshop on Molecular Docking, Virtual Screening & Computational Biology by Under Skill Vigyan Initiative Scheme of DBTIndia, Govt. of India & Coordinated by TSCOST, NIPER Hyderabad
🗓 Scheduled from 28th March to 8th April, 2022
🧿 NO registration fee
🖇Check the brochure for more details and👨💻 apply
http://www.niperhyd.ac.in/PDFFiles/FDP_Brochure_2022.pdf
📢«««««««««
Channel @llbschool
Forum @letslearnbioinformatics
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#workshop #docking #modelling #ml #fb
Online Cloud-based Hands on Workshop on Molecular Docking, Pharmacophore Modeling and Machine Learning
🗓Date: 15 to 16 March 2022 ~ Time: 9:30 - 16:00 IST
🎯Outcomes of the workshop
- Participants will get practical experience and in-person guidance in using the Maestro GUI, covering the organic molecule sketching, protein preparation, and screening using Molecular Docking for hit identification of molecules against therapeutic targets.
- The lectures will also deal with a brief theory and practical experience on Pharmacophore Modelling, Shape based Screening & Core Hopping and Machine-Learning Model building using AutoQSAR
🖥Hardware Requirements:
Computer/ Laptop, Chrome browser, Internet Connection (~5Mbps)
👨💻Register via below link
https://docs.google.com/forms/d/e/1FAIpQLSei0TMR7SpFNaWZbspy72FJGpIAS3U5o1stiasvR0qV6kwYHw/viewform
📢«««««««
Channel @llbschool
Forum @letslearnbioinformatics
Online Cloud-based Hands on Workshop on Molecular Docking, Pharmacophore Modeling and Machine Learning
🗓Date: 15 to 16 March 2022 ~ Time: 9:30 - 16:00 IST
🎯Outcomes of the workshop
- Participants will get practical experience and in-person guidance in using the Maestro GUI, covering the organic molecule sketching, protein preparation, and screening using Molecular Docking for hit identification of molecules against therapeutic targets.
- The lectures will also deal with a brief theory and practical experience on Pharmacophore Modelling, Shape based Screening & Core Hopping and Machine-Learning Model building using AutoQSAR
🖥Hardware Requirements:
Computer/ Laptop, Chrome browser, Internet Connection (~5Mbps)
👨💻Register via below link
https://docs.google.com/forms/d/e/1FAIpQLSei0TMR7SpFNaWZbspy72FJGpIAS3U5o1stiasvR0qV6kwYHw/viewform
📢«««««««
Channel @llbschool
Forum @letslearnbioinformatics
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#competiotion #docking
The Blind Docking Competition using Achilles Blind Docking Server to find novel inhibitors against WEE1.
🖇Link to Achilles Blind Docking Server
https://lnkd.in/ecwqkHgX
🌐For more details join BIO-HPC discord community:
https://discord.com/invite/DSMkjFFu
📢«««««««««
Channel @llbschool
Forum @letslearnbioinformatics
Participate (individually or in groups) in The Blind Docking Competition using Achilles Blind Docking Server to find novel inhibitors against WEE1.
🖇Link to Achilles Blind Docking Server
https://lnkd.in/ecwqkHgX
🌐For more details join BIO-HPC discord community:
https://discord.com/invite/DSMkjFFu
📢«««««««««
Channel @llbschool
Forum @letslearnbioinformatics
❤2👍2
#course #online #docking #bioinfo
organised by RGCB - BIOINFORMATICS FACILITY
This course is for people who want to study the theoretical foundations of Molecular Docking as well as a hands-on approach.
🦾Requirements
- Although no prior expertise with structural bioinformatics is necessary, a basic understanding of protein structure is advantageous.
- It is not necessary to have prior experience with a UNIX-like command-line environment, but it will aid in typing the instructions into the modelling concepts and biology.
✍️Topics to be covered
- Concepts of Molecular Docking
- Identification and evaluation of Binding Pocket / Active site
- Scoring Functions to rank candidate molecules
- Hands-on training
🗓Date : 27-05-2022
⏰Time : 9:30 AM - 2:30 PM
📡Mode : Virtual (GOTOMeeting)
👨💻Apply
https://rgcb.res.in/cbb/cbb-create.php?wrkshp=13
📢««««««««
𝗖𝗵𝗮𝗻𝗻𝗲𝗹 @llbschool
Forum @letslearnbioinformatics
ONLINE COURSEPRACTICES IN MOLECULAR DOCKING
organised by RGCB - BIOINFORMATICS FACILITY
This course is for people who want to study the theoretical foundations of Molecular Docking as well as a hands-on approach.
🦾Requirements
- Although no prior expertise with structural bioinformatics is necessary, a basic understanding of protein structure is advantageous.
- It is not necessary to have prior experience with a UNIX-like command-line environment, but it will aid in typing the instructions into the modelling concepts and biology.
✍️Topics to be covered
- Concepts of Molecular Docking
- Identification and evaluation of Binding Pocket / Active site
- Scoring Functions to rank candidate molecules
- Hands-on training
🗓Date : 27-05-2022
⏰Time : 9:30 AM - 2:30 PM
📡Mode : Virtual (GOTOMeeting)
👨💻Apply
https://rgcb.res.in/cbb/cbb-create.php?wrkshp=13
📢««««««««
𝗖𝗵𝗮𝗻𝗻𝗲𝗹 @llbschool
Forum @letslearnbioinformatics
❤3👍3
#resource #docking #cheminfo
EquiBind: The new protein-ligand docking tool out from the MIT
- It's uses Geometric Deep Learning for Drug Binding Structure Prediction, and consider the ligand flexibility, but uses only rigid protein. Simply put it's a graph neural network that can understand geometric first-principle thus it doesn't require data augmentation (as used in Alphafold2). Ligands are represented as point clouds. Proteins are represented as graph of residue positioned at the α-carbon coordinate, edge are given by a k-NN graph using Euclidian distance of the original node coordinates. It's trained on PDBbind v2020.
- It is used to find a pose in blind docking and then they combine it with QuickVina 2 or SMINA in order to locally find the best fit.
- In collaboration with l'ETH Zurich, they have previously released EquiDock which work in a similar way but for rigid protein-protein docking.
📚Github EquiBind
📚Github EquiDock
🌐Learn More from Paper
📢«««««««
@letslearnbioinformatics
EquiBind: The new protein-ligand docking tool out from the MIT
- It's uses Geometric Deep Learning for Drug Binding Structure Prediction, and consider the ligand flexibility, but uses only rigid protein. Simply put it's a graph neural network that can understand geometric first-principle thus it doesn't require data augmentation (as used in Alphafold2). Ligands are represented as point clouds. Proteins are represented as graph of residue positioned at the α-carbon coordinate, edge are given by a k-NN graph using Euclidian distance of the original node coordinates. It's trained on PDBbind v2020.
- It is used to find a pose in blind docking and then they combine it with QuickVina 2 or SMINA in order to locally find the best fit.
- In collaboration with l'ETH Zurich, they have previously released EquiDock which work in a similar way but for rigid protein-protein docking.
📚Github EquiBind
📚Github EquiDock
🌐Learn More from Paper
📢«««««««
@letslearnbioinformatics
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